Génomique évolutive et gestion des populations (GE²pop)

Publications clés

Date de mise à jour : 3 juin 2016

Publications clés de l'équipe.


Batet M, Harispe S, Ranwez S, Sanchez D, Ranwez V (2014) An information theoretic approach to improve semantic similarity assessments across multiple ontologies. Information Sciences 283:197-210. doi:10.1016/j.ins.2014.06.039

Bonhomme M, Andre O, Badis Y, Ronfort J, Burgarella C, Chantret N, Prosperi JM, Briskine R, Mudge J, Debelle F, Navier H, Miteul H, Hajri A, Baranger A, Tiffin P, Dumas B, Pilet-Nayel ML, Young ND, Jacquet C (2014) High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches. New Phytologist 201 (4):1328-1342. doi:10.1111/nph.12611

Chentoufi L, Sahri A, Arbaoui M, Belqadi L, Birouk A, Roumet P, Muller MH (2014) Anchoring durum wheat diversity in the reality of traditional agricultural systems: varieties, seed management, and farmers' perception in two Moroccan regions. Journal of Ethnobiology and Ethnomedicine 10:58. doi:10.1186/1746-4269-10-58

Chentoufi L, Sahri A, Arbaoui M, Birouk A, Roumet P, Muller M-H, Belqadi L (2014) Diversité agro-morphologique et gestion variétale par les agriculteurs du blé dur (Triticum turgidum ssp. durum) dans le Pré-Rif marocain. Revue Marocaine des Sciences Agronomiques et Vétérinaires 2 (2):30-38.

Clermont D, Santoni S, Saker S, Gomard M, Gardais E, Bizet C (2014) Assessment of DNA encapsulation, a new room-temperature DNA storage method. Biopreservation and Biobanking 12 (3):176-183. doi:10.1089/bio.2013.0082

David J, Holtz Y, Ranwez V, Santoni S, Sarah G, Ardisson M, Poux G, Choulet F, Genthon C, Roumet P, Tavaud-Pirra M (2014) Genotyping by sequencing transcriptomes in an evolutionary pre-breeding durum wheat population. Molecular Breeding 34 (4):1531-1548. doi:10.1007/s11032-014-0179-z

Douzery EJP, Scornavacca C, Romiguier J, Belkhir K, Galtier N, Delsuc F, Ranwez V (2014) OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals. Molecular Biology and Evolution 31 (7):1923-1928. doi:10.1093/molbev/msu132

Ducatez S, Humeau A, Congretel M, Freville H, Baguette M (2014) Butterfly species differing in mobility show different structures of dispersal-related syndromes in the same fragmented landscape. Ecography 37 (4):378-389. doi:10.1111/j.1600-0587.2013.00365.x

Fiorini N, Ranwez S, Montmain J, Ranwez V (2014) Coping with Imprecision During a Semi-automatic Conceptual Indexing Process. In: Laurent A, Strauss O, BouchonMeunier B, Yager RR (eds) Information Processing and Management of Uncertainty in Knowledge-Based Systems, Pt Iii, vol 444. Communications in Computer and Information Science. pp 11-20

Fischer I, Dainat J, Ranwez V, Glemin S, Dufayard JF, Chantret N (2014) Impact of recurrent gene duplication on adaptation of plant genomes. Bmc Plant Biology 14. doi:10.1186/1471-2229-14-151

Glemin S, Clement Y, David J, Ressayre A (2014) GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis. Trends in Genetics 30 (7):263-270. doi:10.1016/j.tig.2014.05.002

Mariac C, Scarcelli N, Pouzadou J, Barnaud A, Billot C, Faye A, Kougbeadjo A, Maillol V, Martin G, Sabot F, Santoni S, Vigouroux Y, Couvreur TLP (2014) Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies. Molecular Ecology Resources 14 (6):1103-1113. doi:10.1111/1755-0998.12258

Nabholz B, Sarah G, Sabot F, Ruiz M, Adam H, Nidelet S, Ghesquiere A, Santoni S, David J, Glemin S (2014) Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Molecular Ecology 23 (9):2210-2227. doi:10.1111/mec.12738

Nguyen NNT, Ranwez V, Vile D, Soulie MC, Dellagi A, Expert D, Gosti F (2014) Evolutionary tinkering of the expression of PDFls suggests their joint effect on zinc tolerance and the response to pathogen attack. Frontiers in Plant Science 5. doi:10.3389/fpls.2014.00070

Picq S, Santoni S, Lacombe T, Latreille M, Weber A, Ardisson M, Ivorra S, Maghradze D, Arroyo Garcia R, Chatelet P, This P, Terral JF, Bacilieri R (2014) A small XY chromosomal region explains sex determination in wild dioecious #V. vinifera# and the reversal to hermaphroditism in domesticated grapevines. BMC Plant Biology 14:229 (217 p.). doi:10.1186/s12870-014-0229-z

Prosperi JM, Jenczewski E, Muller MH, Fourtier S, Sampoux JP, Ronfort J (2014) Alfalfa domestication history, genetic diversity and genetic resources. Legume Perspectives 4:13-14.

Roumet P, Debaecke P, A. G, Lorgeou J (2014) Mettre en évidence de manière expérimentale les interactions G*E*C. In: FormSciences (ed) Conception d'idéotypes de plante pour une agriculture durable. Debaecke, P. Quilot-Turion, B., pp 81-114

Sahri A, Chentoufi L, Arbaoui M, Ardisson M, Belqadi L, Birouk A, Roumet P, Muller MH (2014) Towards a comprehensive characterization of durum wheat landraces in Moroccan traditional agrosystems: analysing genetic diversity in the light of geography, farmers' taxonomy and tetraploid wheat domestication history. Bmc Evolutionary Biology 14:264. doi:10.1186/s12862-014-0264-2

Sahri A, Chentoufi L, Arbaoui M, Muller MH, Roumet P, Belqadi L, Birouk A (2014) Impact du relief et des circuits semenciers locaux sur la diversité agro-morphologique du blé dur (Triticum turgidum ssp. durum) dans la vallée d'Er Rich - Imilchil (Maroc). Revue Marocaine des Sciences Agronomiques et Vétérinaires 2 (2):39-49

Tonnabel J, Olivieri I, Mignot A, Rebelo A, Justy F, Santoni S, Caroli S, Saune L, Bouchez O, Douzery EJP (2014) Developing nuclear DNA phylogenetic markers in the angiosperm genus Leucadendron (Proteaceae): A next-generation sequencing transcriptomic approach. Molecular Phylogenetics and Evolution 70:37-46. doi:10.1016/j.ympev.2013.07.027

Trottet M, Atanova-Penichon V, Ferreyrolle J, Gervais L, Pinson-Gadais L, Roumet P (2014) Caractérisation de sources de résistance à la fusariose chez le blé dur. Innovations Agronomiques 3:173-180.

Vilmus I, Ecarnot M, Verzelen N, Roumet P (2014) Monitoring Nitrogen Leaf Resorption Kinetics by Near-Infrared Spectroscopy during Grain Filling in Durum Wheat in Different Nitrogen Availability Conditions. Crop Science 54 (1):284-296. doi:10.2135/cropsci2013.02.0099


Chan Y-b, Ranwez V, Scornavacca C (2015) Exploring the space of gene/species reconciliations with transfers. Journal of Mathematical Biology 71 (5):1179-1209. doi:10.1007/s00285-014-0851-2

Fiorini N, Ranwez S, Montmain J, Ranwez V (2015) USI: a fast and accurate approach for conceptual document annotation. Bmc Bioinformatics 16:83. doi:10.1186/s12859-015-0513-4

Jaillais B, Roumet P, Pinson-Gadais L, Bertrand D (2015) Detection of Fusarium head blight contamination in wheat kernels by multivariate imaging. Food control 54:250-258. doi:DOI: 10.1016/j.footcont.2015.01.048

Ranwez V, Scornavacca C, Doyon J, Berry V (2015) Inferring gene duplications, transfers and losses can be done in a discrete framework. Journal of Mathematical Biology: Sep 4.

Roumet M, Cayre A, Latreille M, Muller MH (2015) Quantifying temporal isolation: a modelling approach assessing the effect of flowering time differences on crop-to-weed pollen flow in sunflower. Evolutionary Applications 8:64-74. doi:10.1111/eva.12222

To TH, Jacox E, Ranwez V, Scornavacca C (2015) A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality. Bmc Bioinformatics 16. doi:10.1186/s12859-015-0803-x

Turner KG, Freville H, Rieseberg LH (2015) Adaptive plasticity and niche expansion in an invasive thistle. Ecology and Evolution 5 (15):3183-3197. doi:10.1002/ece3.1599

Vagne C, David J, Tavaud M, Fontez B (2015) Reciprocal sign epistasis and truncation selection: When is recombination favorable in a pre-breeding program with a selfing species? Journal of Theoretical Biology 386:44-54. doi:10.1016/j.jtbi.2015.08.013

Zehdi-Azouzi S, Cherif E, Moussouni S, Gros-Balthazard M, Naqvi SA, Ludena B, Castillo K, Chabrillange N, Bouguedoura N, Bennaceur M, Si-Dehbi F, Abdoulkader S, Daher A, Terral JF, Santoni S, Ballardini M, Mercuri A, Ben Salah M, Kadri K, Othmani A, Littardi C, Salhi-Hannachi A, Pintaud JC, Aberlenc-Bertossi F (2015) Genetic structure of the date palm (Phoenix dactylifera) in the Old World reveals a strong differentiation between eastern and western populations. Annals of Botany 116 (1):101-112. doi:10.1093/aob/mcv068

Date de mise à jour : 3 juin 2016

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