Génomique évolutive et gestion des populations (GE²pop)

Les publications des agents de l'équipe : articles publiés dans les revues à facteur d'impact, autres articles, ouvrages et chapitres d'ouvrage.


Mariac C., Ousseini I.S., Alio A.K., Jugdé H., Pham J.L., Bezançon G., Ronfort J., Descroix L., Vigouroux Y. Early View. (2016/07/26). Spatial and temporal variation in selection of genes associated with pearl millet varietal quantitative traits in situ. Frontiers in Genetics, 7 : (9 p.)

Sarah G., Homa F., Pointet S., Contreras S., Sabot F., Nabholz B., Santoni S., Sauné L., Ardisson M., Chantret N., Sauvage C., Tregear J., Jourda C., Pot D., Vigouroux Y., Chair H., Scarcelli N., Billot C., Yahiaoui N., Bacilieri R., Khadari B., Boccara M., Barnaud A., Peros J.P., Labouisse J.P., Pham J.L., David J., Glémin S., Ruiz M. Early View. (2016/08/26). A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Molecular Ecology Resources : (16 p.)

Abu Awad D., Billiard S., Tran V.C. 2016. Perenniality induces high inbreeding depression in self-fertilising species. Theoretical Population Biology, 112 : 43-51

Bataillon T., Galtier N., Bernard A., Cryer N., Faivre N., Santoni S., Severac D., Mikkelsen T.N., Larsen K.S., Beier C., Sørensen J.G., Holmstrup M., Ehlers B.K. 2016. A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate. Global Change Biology, 22(7) : 2370–2379

Breton C.M., Farinelli D., Koubouris G., Berville A. 2016. A model based on S-allele dominance relationships to explain pseudo self-fertility of varieties in the olive tree. Euphytica, 210(1) : 105-117

Burgarella C., Chantret N., Gay L., Prosperi J.M., Bonhomme M., Tiffin P., Young N.D., Ronfort J. 2016. Adaptation to climate through flowering phenology: a case study in Medicago truncatula#. Molecular Ecology, 25(14) : 3397-3415

Fiorini N., Harispe S., Ranwez S., Montmain J., Ranwez V. 2016. Fast and reliable inference of semantic clusters. Knowledge-Based Systems, 111 : 133-143

Fischer I., Dievart A., Droc G., Dufayard J.F., Chantret N. 2016. (2016). Evolutionary dynamics of the Leucine-Rich Repeats Receptor-Like Kinase (LRR-RLK) subfamily in angiosperms. Plant Physiology, 170(3) : 1595-1610

Gaüzère J., Oddou Muratorio S., Gay L., Klein E.K. 2016. Partial genotyping at polymorphic markers can improve heritability estimates in sibling groups. Molecular Ecology Resources, 16(6) : 1340-1352

Gouesnard B., Zanetto A., Welcker C. 2016. Identification of adaptation traits to drought in collections of maize landraces from Southern Europe and temperate regions. Euphytica, 209(3) : 565-584

Holtz Y., Ardisson M., Ranwez V., Besnard A., Leroy P., Poux G., Roumet P., Viader V., Santoni S., David J. 2016. Genotyping by sequencing using specific allelic capture to build a high-density genetic map of durum wheat. Plos One, 11(5) : (20 p.)

Karaki L., Da Silva P., Rizk F., Chouabe C., Chantret N., Eyraud V., Gressent F., Sivignon C., Rahioui I., Kahn D., Brochier Armanet C., Rahbe Y., Royer C. 2016. Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula. BMC Plant Biology, 16 : 63 (19 p.)

Mariette S., Tavaud M., Horvath A. 2016. Domestication et histoire évolutive des espèces fruitières : que pouvons-nous apprendre des études de génétique ? Exemples chez les Rosacées. In: Ruas M.P. Des fruits d'ici et d'ailleurs : regards sur l'histoire de quelques fruits consommés en Europe. Montreuil, France:Omniscience. Histoire des Savoirs : 117-138

Montazeaud G., Karatoğma H., Özturk I., Roumet P., Ecarnot M., Crossa J., Özer E., Özdemir F., Lopes M.S. 2016. Predicting wheat maturity and stay–green parameters by modeling spectral reflectance measurements and their contribution to grain yield under rainfed conditions. Field Crops Research, 196 : 191-198

Ostrowski M.F., Prosperi J.M., David J. 2016. Potential implications of climate change on aegilops species distribution: sympatry of these crop wild relatives with the major european crop Triticum aestivum and conservation issues. Plos One, 11(4) : 27

Petitot A.S., Dereeper A., Agbessi M., Da Silva C., Guy J., Ardisson M., Fernandez D. 2016. Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants. Molecular Plant Pathology, 17(6) : 860-874

Ranwez V. 2016. Two simple and efficient algorithms to compute the SP-Score objective function of a multiple sequence alignment. PloS One, 11(8) : e0160043

Ranwez V., Scornavacca C., Doyon J.P., Berry V. 2016. Inferring gene duplications, transfers and losses can be done in a discrete framework. Journal of Mathematical Biology, 72(7) : 1811-1844

Rienth M., Torregrosa L., Sarah G., Ardisson M., Brillouet J.M., Romieu C. 2016. Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome. Bmc Plant Biology, 16 : 164

Vacheron J., Combes Meynet E., Walker V., Gouesnard B., Muller D., Moenne Loccoz Y., Prigent Combaret C. 2016. Expression on roots and contribution to maize phytostimulation of 1-aminocyclopropane-1-decarboxylate deaminase gene acdS in Pseudomonas fluorescens F113. Plant and Soil, 407(1-2) : 187-202

Youssef C., Aubry C., Montrichard F., Beucher D., Juchaux M., Ben C., Prosperi J.M., Teulat B. 2016. Cell length instead of cell number becomes the predominant factor contributing to hypocotyl length genotypic differences under abiotic stress in Medicago truncatula#. Physiologia Plantarum, 156(1) : 108-124

Zehdi Azouzi S., Cherif E., Guenni K., Ben Abdelkrim A., Bermil A., Rhouma S., Ben Salah M., Santoni S., Pintaud J.C., Aberlenc Bertossi F., Hannachi A.S. 2016. Endemic insular and coastal Tunisian date palm genetic diversity. Genetica, 144(2) : 181-190

Chalak L., Haouane H., Essalouh L., Santoni S., Besnard G., Khadari B. 2015. Extent of the genetic diversity in Lebanese olive (#Olea europaea L.) trees: A mixture of an ancient germplasm with recently introduced varieties. Genetic Resources and Crop Evolution, 62(4) : 621-633

Fiorini N., Ranwez S., Montmain J., Ranwez V. 2015. USI: a fast and accurate approach for conceptual document annotation. Bmc Bioinformatics, 16 : 83

Jaillais B., Roumet P., Pinson Gadais L., Bertrand D. 2015. Detection of Fusarium head blight contamination in wheat kernels by multivariate imaging. Food Control, 54 : 250-258

Nougué O., Rode N., Zahab R., Ségard A., Chevin L.M., Haag C.R., Lenormand T. 2015. (2015/10/05). Automixis in Artemia: Solving a century-old controversy. Journal of Evolutionary Biology, 28(12) : 2337–2348

Roumet M., Cayre A., Latreille M., Muller M.H. 2015. Quantifying temporal isolation: a modelling approach assessing the effect of flowering time differences on crop-to-weed pollen flow in sunflower. Evolutionary Applications, 8(1) : 64-74

To T.H., Jacox E., Ranwez V., Scornavacca C. 2015. A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality. Bmc Bioinformatics, 16 : 384

Turner K.G., Fréville H., Rieseberg L.H. 2015. Adaptive plasticity and niche expansion in an invasive thistle. Ecology and Evolution, 5(15) : 3183-3197

Vagne C., David J., Tavaud M., Fontez B. 2015. Reciprocal sign epistasis and truncation selection: When is recombination favorable in a pre-breeding program with a selfing species?. Journal of Theoretical Biology, 386 : 44-54

Zehdi Azouzi S., Cherif E., Moussouni S., Gros Balthazard M., Abbas Naqvi S., Ludena B., Castillo K., Chabrillange N., Bouguedoura N., Bennaceur M., Si Dehbi F., Abdoulkader S., Daher A., Terral J.F., Santoni S., Ballardini M., Mercuri A., Ben Salah M., Kadri K., Othmani A., Littardi C., Salhi Hannachi A., Pintaud J.C., Aberlenc Bertossi F. 2015. Genetic structure of the date palm (Phoenix dactylifera) in the Old World reveals a strong differentiation between eastern and western populations. Annals of Botany, 116(1) : 101-112

Aberlenc Bertossi F., Castillo K., Tranchant Dubreuil C., Cherif E., Ballardini M., Abdoulkder S., Gros Balthazard M., Chabrillange N., Santoni S., Mercuri A., Pintaud J.C. 2014. In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability. Applications in Plant Sciences, 2(1) : 1300058 (6 p.)

Batet M., Harispe S., Ranwez S., Sanchez D., Ranwez V. 2014. An information theoretic approach to improve semantic similarity assessments across multiple ontologies. Information Sciences, 283 : 197-210

Bonhomme M., Andre O., Badis Y., Ronfort J., Burgarella C., Chantret N., Prosperi J.M., Briskine R., Mudge J., Debelle F., Navier H., Miteul H., Hajri A., Baranger A., Tiffin P., Dumas B., Pilet Nayel M.L., Young N.D., Jacquet C. 2014. High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches. New Phytologist, 201(4) : 1328-1342

Chentoufi L., Sahri A., Arbaoui M., Belqadi L., Birouk A., Roumet P., Muller M.H. 2014. Anchoring durum wheat diversity in the reality of traditional agricultural systems: varieties, seed management, and farmers' perception in two Moroccan regions. Journal of Ethnobiology and Ethnomedicine, 10(1) : 58 (16 p.)

Chentoufi L., Sahri A., Arbaoui M., Birouk A., Roumet P., Muller M.H., Belqadi L. 2014. Diversité agro-morphologique et gestion variétale par les agriculteurs du blé dur (#Triticum turgidum ssp. durum) dans le Pré-Rif marocain. Revue Marocaine des Sciences Agronomiques et Vétérinaires, 2(2) : 30-38

Clermont D., Santoni S., Saker S., Gomard M., Gardais E., Bizet C. 2014. Assessment of DNA encapsulation, a new room-temperature DNA storage method. Biopreservation and Biobanking, 12(3) : 176-183

David J., Holtz Y., Ranwez V., Santoni S., Sarah G., Ardisson M., Poux G., Choulet F., Genthon C., Roumet P., Tavaud Pirra M. 2014. Genotyping by sequencing transcriptomes in an evolutionary pre-breeding durum wheat population. Molecular Breeding, 34(4) : 1531-1548

Douzery E.J.P., Scornavacca C., Romiguier J., Belkhir K., Galtier N., Delsuc F., Ranwez V. 2014. OrthoMaM v8: A database of orthologous exons and coding sequences for comparative genomics in mammals. Molecular Biology and Evolution, 31(7) : 1923-1928

Ducatez S., Humeau A., Congretel M., Freville H., Baguette M. 2014. Butterfly species differing in mobility show different structures of dispersal-related syndromes in the same fragmented landscape. Ecography, 37(4) : 378-389

Fischer I., Dainat J., Ranwez V., Glemin S., Dufayard J.F., Chantret N. 2014. Impact of recurrent gene duplication on adaptation of plant genomes. BMC Plant Biology, 14 : 151 (15 p.)

Glémin S., Clément Y., David J., Ressayre A. 2014. GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis. Trends in Genetics, 30(7) : 263-270

Julier B., Herrmann D., Flajoulot S., Barre P., Huyghe C., Ronfort J. 2014. Structuration de la diversité génétique chez la luzerne cultivée, conséquence pour l'identification de gènes liés à des caractères agronomiques. Innovations Agronomiques, 35 : 13-18

Koubouris G.C., Breton C.M., Metzidakis I.T., Vasilakakis M.D. 2014. Self-incompatibility and pollination relationships for four Greek olive cultivars. Scientia Horticulturae, 176 : 91-96

Mariac C., Scarcelli N., Pouzadou J., Barnaud A., Billot C., Faye A., Kougbeadjo A., Maillol V., Martin G., Sabot F., Santoni S., Vigouroux Y., Couvreur T. 2014. Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies. Molecular Ecology Resources, 14(6) : 1103-1113

Nabholz B., Sarah G., Sabot F., Ruiz M., Adam H., Nidelet S., Ghesquiere A., Santoni S., David J., Glemin S. 2014. Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Molecular Ecology, 23(9) : 2210-2227

Nguyen N.N.T., Ranwez V., Vile D., Soulie M.C., Dellagi A., Expert D., Gosti F. 2014. Evolutionary tinkering of the expression of PDFls suggests their joint effect on zinc tolerance and the response to pathogen attack. Frontiers in Plant Science, 5 : 70

Picq S., Santoni S., Lacombe T., Latreille M., Weber A., Ardisson M., Ivorra S., Maghradze D., Arroyo Garcia R., Chatelet P., This P., Terral J.F., Bacilieri R. 2014. A small XY chromosomal region explains sex determination in wild dioecious V. vinifera and the reversal to hermaphroditism in domesticated grapevines. BMC Plant Biology , 14 : 229 (17 p.)

Prosperi J.M., Jenczewski E., Muller M.H., Fourtier S., Sampoux J.P., Ronfort J. 2014. Alfalfa domestication history, genetic diversity and genetic resources. Legume Perspectives, 4 : 13-14

Rienth M., Torregrosa L., Ardisson M., De Marchi R., Romieu C. 2014. Versatile and efficient RNA extraction protocol for grapevine berry tissue, suited for next generation RNA sequencing. Australian Journal of Grape and Wine Research, 20(2) : 247-254

Righetti L., Djennane S., Berthelot P., Cournol R., Wilmot N., Loridon K., Vergne E., Chevreau E. 2014. Elimination of the nptII marker gene in transgenic apple and pear with a chemically inducible R/Rs recombinase. Plant Cell Tissue and Organ Culture, 117(3) : 335-348

Sahri A., Chentoufi L., Arbaoui M., Ardisson M., Belqadi L., Birouk A., Roumet P., Muller M.H. 2014. Towards a comprehensive characterization of durum wheat landraces in Moroccan traditional agrosystems: Analysing genetic diversity in the light of geography, farmers' taxonomy and tetraploid wheat domestication history. BMC Evolutionary Biology, 14 : 264 (18 p.)

Sahri A., Chentoufi L., Arbaoui M., Muller M.H., Roumet P., Belqadi L., Birouk A. 2014. Impact du relief et des circuits semenciers locaux sur la diversité agro-morphologique du blé dur (#Triticum turgidum ssp. durum) dans la vallée d’Er Rich – Imilchil (Maroc). Revue Marocaine des Sciences Agronomiques et Vétérinaires, 2(2) : 39-49

Tonnabel J., Olivieri I., Mignot A., Rebelo A., Justy F., Santoni S., Caroli S., Saune L., Bouchez O., Douzery E.J.P. 2014. Developing nuclear DNA phylogenetic markers in the angiosperm genus Leucadendron (Proteaceae): A next-generation sequencing transcriptomic approach. Molecular Phylogenetics and Evolution, 70 : 37-46

Trottet M., Atanosova Penichon V., Ferreyrolle J., Gervais L., Pinson Gadais L., Roumet P. 2014. Characterization of new sources of resistance to Fusarium ear blight in durum wheat. Innovations Agronomiques, 35 : 173-180

Vilmus I., Ecarnot M., Verzelen N., Roumet P. 2014. Monitoring nitrogen leaf resorption kinetics by near-infrared spectroscopy during grain filling in durum wheat in different nitrogen availability conditions. Crop Science, 54(1) : 284-296

Andrieu E., Freville H., Besnard A., Vaudey V., Gauthier P., Thompson J.D., Debussche M. 2013. Forest-cutting rapidly improves the demographic status of Paeonia officinalis, a species threatened by forest closure. Population Ecology, 55(1) : 147-158

Avia K., Pilet Nayel M.L., Bahrman N., Baranger A., Delbreil B., Fontaine V., Hamon C., Hanocq E., Niarquin M., Sellier H., Vuylsteker C., Prosperi J.M., Lejeune Henaut I. 2013. Genetic variability and QTL mapping of freezing tolerance and related traits in Medicago truncatula#. Theoretical and Applied Genetics, 126(9) : 2353-2366

Ben C., Toueni M., Montanari S., Tardin M.C., Fervel M., Negahi A., Saint Pierre L., Mathieu G., Gras M.C., Noël D., Prospéri J.M., Pilet Nayel M.L., Baranger A., Huguet T., Julier B., Rickauer M., Gentzbittel L. 2013. Natural diversity in the model legume Medicago truncatula allows identifying distinct genetic mechanisms conferring partial resistance to Verticillium wilt. Journal of Experimental Botany, 64(1) : 317-332

Besnard G., Khadari B., Navascués M., Fernández Mazuecos M., El Bakkali A., Arrigo N., Baali Cherif D., Brunini Bronzini de Caraffa V., Santoni S., Vargas P., Savolainen V. 2013. The complex history of the olive tree: From Late Quaternary diversification of Mediterranean lineages to primary domestication in the northern Levant. Proceedings of the Royal Society B: Biological Sciences, 280(1756) : 20122833 (7 p.)

Chan Y.b., Ranwez V., Scornavacca C. 2013. Reconciliation-based detection of co-evolving gene families. BMC Bioinformatics, 14 : 332 (16 p.)

Cherif E., Zehdi S., Castillo K., Chabrillange N., Abdoulkader S., Pintaud J.C., Santoni S., Salhi Hannachi A., Glemin S., Aberlenc Bertossi F. 2013. Male-specific DNA markers provide genetic evidence of an XY chromosome system, a recombination arrest and allow the tracing of paternal lineages in date palm. New Phytologist, 197(2) : 409-415

Compan F., Ecarnot M., Roumet P. 2013. Mesure de la qualité du grain de blé dur par spectrométrie proche infrarouge. Cahier des Techniques de l’INRA, 80(3) : (8 p.)

Cursach J., Besnard A., Rita J., Freville H. 2013. Demographic variation and conservation of the narrow endemic plant Ranunculus weyleri. Acta Oecologica-International Journal of Ecology, 53 : 102-109

De Mita S., Thuillet A.C., Gay L., Ahmadi N., Manel S., Ronfort J., Vigouroux Y. 2013. Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Molecular Ecology, 22(5) : 1383-1399

Ducatez S., Baguette M., Trochet A., Chaput Bardy A., Legrand D., Stevens V.M., Freville H. 2013. Flight endurance and heating rate vary with both latitude and habitat connectivity in a butterfly species. Oikos, 122(4) : 601-611

Ecarnot M., Baczyk P., Tessarotto L., Chervin C. 2013. Rapid phenotyping of the tomato fruit model, Micro-Tom, with a portable VIS-NIR spectrometer. Plant Physiology and Biochemistry, 70 : 159-163

Ecarnot M., Compan F., Roumet P. 2013. Assessing leaf nitrogen content and leaf mass per unit area of wheat in the field throughout plant cycle with a portable spectrometer. Field Crops Research, 140 : 44-50

El Bakkali A., Haouane H., Hadiddou A., Oukabli A., Santoni S., Udupa S.M., Van Damme P., Khadari B. 2013. Genetic diversity of on-farm selected olive trees in Moroccan traditional olive orchards. Plant Genetic Resources Characterization and Utilization, 11(2) : 97-105

Freville H., Choquet R., Pradel R., Cheptou P.O. 2013. Inferring seed bank from hidden Markov models: new insights into metapopulation dynamics in plants. Journal of Ecology, 101(6) : 1572-1580

Gay L., Siol M., Ronfort J. 2013. Pedigree-free estimates of heritability in the wild : Promising prospects for selfing populations. PLoS One, 8(6) : e66983

Glemin S., Ronfort J. 2013. Adaptation and maladaptation in selfing and outcrossing species: New mutations versus standing variation. [with Correction]. Evolution, 67(1 &11) : 225-240 + 3381(1 p.)

Goldringer I., Bonnin I., David J. 2013. Rôle de la sélection dans la dynamique de la diversité des Blés cultivés : de la domestication à la sélection moderne au 20ème siècle. Innovations Agronomiques, 29 : 1-15

Landey R.B., Cenci A., Georget F., Bertrand B., Camayo G., Dechamp E., Carlos Herrera J., Santoni S., Lashermes P., Simpson J., Etienne H. 2013. High genetic and epigenetic stability in Coffea arabica plants derived from embryogenic suspensions and secondary embryogenesis as revealed by AFLP, MSAP and the phenotypic variation rate. PLoS ONE, 8(2) : e56372 (15 p.)

Leray M., Yang J., Meyer C., Mills S., Agudelo N., Ranwez V., Boehm J., Machida R. 2013. A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents. Frontiers in Zoology, 10 : 34 (14 p.)

Loridon K., Burgarella C., Chantret N., Martins F., Gouzy J., Prosperi J.M., Ronfort J. 2013. Single-nucleotide polymorphism discovery and diversity in the model legume Medicago truncatula#. Molecular Ecology Resources, 13(1) : 84-95

Negahi A., Sarrafi A., Ebrahimi A., Maury P., Prosperi J.M., Ben C., Rickauer M. 2013. Genetic variability of tolerance to Verticillium albo-atrum and Verticillium dahliae in Medicago truncatula#. European Journal of Plant Pathology, 136(1) : 135-143

Némorin A., David J., Maledon E., Nudol E., Dalon J., Arnau G. 2013. Microsatellite and flow cytometry analysis to help understand the origin of Dioscorea alata polyploids. Annals of Botany, 112(5) : 811-819

Nguyen T.H., Ranwez V., Pointet S., Chifolleau A.M.A., Doyon J.P., Berry V. 2013. (2013/04/10). Reconciliation and local gene tree rearrangement can be of mutual profit. Algorithms for Molecular Biology, 8 : 12 (39 p.)

Ranwez S., Duthil B., Sy M., Montmain J., Augereau P., Ranwez V. 2013. How ontology based information retrieval systems may benefit from lexical text analysis. In: Oltramari A., Vossen P., Qin L., Hovy E. New trends of research in ontologies and lexical resources. Berlin, Germany:Springer. Theory and Applications of Natural Language Processing : 209-231

Ranwez V., Holtz Y., Sarah G., Ardisson M., Santoni S., Glemin S., Tavaud Pirra M., David J. 2013. Disentangling homeologous contigs in allo-tetraploid assembly: Application to durum wheat. BMC Bioinformatics, 14(Suppl 15) : S15 (11 p.)

Romiguier J., Ranwez V., Delsuc F., Galtier N., Douzery E.J.P. 2013. Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals. Molecular Biology and Evolution, 30(9) : 2134-2144

Romiguier J., Ranwez V., Douzery E.J.P., Galtier N. 2013. Genomic evidence for large, long-lived ancestors to placental mammals. Molecular Biology and Evolution, 30(1) : 5-13

Ronfort J., Glemin S. 2013. Mating system, Haldane's sieve, and the domestication process. Evolution, 67(5) : 1518-1526

Roumet M., Noilhan C., Latreille M., David J., Muller M.H. 2013. How to escape from crop-to-weed gene flow: phenological variation and isolation-by-time within weedy sunflower populations. New Phytologist, 197(2) : 642-654

Scornavacca C., Paprotny W., Berry V., Ranwez V. 2013. Representing a set of reconciliations in a compact way. Journal of Bioinformatics and Computational Biology, 11(02) : 1250025 (19 p.)

Shahzad Z., Ranwez V., Fizames C., Marques L., Le Martret B., Alassimone J., Gode C., Lacombe E., Castillo T., Saumitou Laprade P., Berthomieu P., Gosti F. 2013. Plant Defensin type 1 (PDF1): protein promiscuity and expression variation within the Arabidopsis genus shed light on zinc tolerance acquisition in Arabidopsis halleri#. New Phytologist, 200(3) : 820-833

Smith K.L., Hale J.M., Gay L., Kearney M., Austin J.J., Parris K.M., Melville J. 2013. Spatio-temporal changes in the structure of an australian frog hybrid zone: a 40-year perspective. Evolution, 67(12) : 3442-3454

Tayeh N., Bahrman N., Devaux R., Bluteau A., Prosperi J.M., Delbreil B., Lejeune Henaut I. 2013. A high-density genetic map of the Medicago truncatula major freezing tolerance QTL on chromosome 6 reveals colinearity with a QTL related to freezing damage on Pisum sativum linkage group VI. Molecular Breeding, 32(2) : 279-289

Thi Hau N., Ranwez V., Berry V., Scornavacca C. 2013. Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods. PLoS One, 8(10) : e73667 (14 p.)

Bouffaud M.L., Kyselkova M., Gouesnard B., Grundmann G., Muller D., Moenne Loccoz Y. 2012. Is diversification history of maize influencing selection of soil bacteria by roots?. Molecular Ecology, 21(1) : 195-206

Bourguiba H., Audergon J.M., Krichen L., Trifi Farah N., Mamouni A., Trabelsi S., D'Onofrio C., Asma B., Santoni S., Khadari B. 2012. Loss of genetic diversity as a signature of apricot domestication and diffusion into the Mediterranean Basin. BMC Plant Biology, 12(1) : 49

Bozzini A., David J., Natoli V. 2012. Origin and distribution of durum wheat genetic diversity in the World. In: Sissons M.J., Abecassis J., Marchylo B., Carcea M. Durum Wheat: Chemistry and Technology (2nd ed.).AACC International Press : 1-14

Breton C., Gil A., Wargnier J., Serieys H., Berville A. 2012. Transfer of architectural traits from perennial Helianthus mollis Lam. to sunflower (#H-annuus L.) and localisation of introgression. Euphytica, 186(2) : 557-572

Breton C., Warnock P., Berville A. 2012. Origin and history of the olive. In: Innocenzo M. Olive Germplasm - the Olive Cultivation, Table Olive and Olive Oil Industry in Italy. Rijeka, Croatie:InTech : 3-22

Breton C.M., Berville A. 2012. New hypothesis elucidates self-incompatibility in the olive tree regarding S-alleles dominance relationships as in the sporophytic model. Comptes Rendus Biologies, 335(9) : 563-572

Cahais V., Gayral P., Tsagkogeorga G., Melo Ferreira J., Ballenghien M., Weinert L., Chiari Y., Belkhir K., Ranwez V., Galtier N. 2012. Reference-free transcriptome assembly in non-model animals from next-generation sequencing data. Molecular Ecology Resources, 12(5) : 834-845

Clarke J.M., Deambrogio E., Hare R.A., Roumet P. 2012. Genetics and breeding of durum wheat. In: Sissons M.J., Abecassis J., Marchylo B., Carcea M. Durum wheat: Chemistry and technology (2nd edition). St. Paul, MN, USA:AACC International : 15-36

Cornillot E., Hadj Kaddour K., Dassouli A., Noel B., Ranwez V., Vacherie B., Augagneur Y., Brès V., Duclos A., Randazzo S., Carcy B., Debierre Grockiego F., Delbecq S., Moubri Ménage K., Shams Eldin H., Usmani Brown S., Bringaud F., Wincker P., Vivarès C.P., Schwarz R.T., Schetters T.P., Krause P.J., Gorenflot A., Berry V., Barbe V., Ben Mamoun C. 2012. Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti (dagger). Nucleic Acids Research, 40(18) : 9102-9114

D'Erfurth I., Le Signor C., Aubert G., Sanchez M., Vernoud V., Darchy B., Lherminier J., Bourion V., Bouteiller N., Bendahmane A., Buitink J., Prosperi J.M., Thompson R., Burstin J., Gallardo K. 2012. A Role for an endosperm-localized subtilase in the control of seed size in legumes. New Phytologist, 196(3) : 738-751

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