Diversité, adaptation et amélioration de la vigne (DAAV)

Publications clés

Date de mise à jour : 30 avril 2023

Bibliographie récente (2018-2023)

Badouin, H., Velt, A., Gindraud, F., Flutre, T., Dumas, V., Vautrin, S., Marande, W., Corbi, J., Sallet, E., Ganofsky, J., Santoni, S., Guyot, D., Ricciardelli, E., Jepsen, K., Käfer, J., Berges, H., Duchêne, E., Picard, F., Hugueney, P., Tavares, R., Bacilieri, R., Rustenholz, C., Marais, G.A.B., (2020). The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication. Genome Biology 21, 223. https://doi.org/10.1186/s13059-020-02131-y

Bigard A., Berhe D., Maoddi E., Sire Y., Boursiquot J.M., Ojeda H., Peros J.P., Doligez A., Romieu C., Torregrosa L. 2018. Vitis vinifera L. fruit diversity to breed varieties anticipating climate changes. Frontiers in Plant Science 9 https://doi.org/10.3389/fpls.2018.00455

Bigard, A., Romieu, C., Ojeda, H., Torregrosa, L., 2022. The sugarless grape trait characterised by single berry phenotyping. OENO ONE 56, 89–102. https://doi.org/10.20870/oeno-one.2022.56.3.5495

Bigard, A., Romieu, C., Sire, Y., Veyret, M., Ojeda, H., Torregrosa, L., 2019. The kinetics of grape ripening revisited through berry density sorting. OENO ONE 53, 709–724. https://doi.org/10.20870/oeno-one.2019.53.4.2224

Bonhomme V, Terral J-F, Zech-Matterne V, Ivorra S, Lacombe T, Deborde G, Kuchler P, Limier B, Pastor T, Rollet P, Bouby L (2021) Seed morphology uncovers 1500 years of vine agrobiodiversity before the advent of the Champagne wine. Scientific Reports 11 (1):2305. doi:10.1038/s41598-021-81787-3

Bonhomme, V., Ivorra, S., Lacombe, T., Evin, A., Figueiral, I., Maghradze, D., Marchal, C., Pagnoux, C., Pastor, T., Pomaredes, H., Bacilieri, R., Terral, J., Bouby, L., (2021) Pip shape echoes grapevine domestication history. SCIENTIFIC REPORTS 11. https://doi.org/10.1038/s41598-021-00877-4

Bonhomme, V., Picq, S., Ivorra, S., Evin, A., Pastor, T., Bacilieri, R., Lacombe, T., Figueiral, I., Terral, J., Bouby, L., 2020. Eco-evo-devo implications and archaeobiological perspectives of trait covariance in fruits of wild and domesticated grapevines. PLOS ONE 15. https://doi.org/10.1371/journal.pone.0239863

Bouby, L., Wales, N., Jalabadze, M., Rusishvili, N., Bonhomme, V., Ramos-Madrigal, J., Evin, A., Ivorra, S., Lacombe, T., Pagnoux, C., Boaretto, E., Gilbert, M., Bacilieri, R., Lordkipanidze, D., Maghradze, D., (2022) Tracking the history of grapevine cultivation in Georgia by combining geometric morphometrics and ancient DNA (vol 30, pg 63, 2021). VEGETATION HISTORY AND ARCHAEOBOTANY 31, 329–329. https://doi.org/10.1007/s00334-022-00872-3

Brault C,  Segura V, This P, Le Cunff L, Flutre T, François P, Pons T, Péros J-P, Doligez A. (2022) Across-population genomic prediction in grapevine opens up promising prospects for breeding Horticulture Research, uhac041, https://doi.org/10.1093/hr/uhac041

Brault C, Doligez A, Le Cunff L,  Coupel-Ledru A, Simonneau T, Chiquet J,  This P,  Flutre T, (2021) Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection to cope with climate change affecting grapevine, G3, 2021, 11(9), jkab248)

Brault C,Lazerges T, Doligez A., Thomas M, Ecarnot M, Roumet P, Bertrand Y, Berger G, Pons T, François P, Le Cunff L, This P, Segura V  (2022) Interest of phenomic prediction as an alternative to genomic prediction in grapevine  Plant Methods 18:108, https://doi.org/10.1186/s13007-022-00940

Brillouet, J., Romieu, C., Bacilieri, R., Nick, P., Trias-Blasi, A., Maul, E., Solymosi, K., Teszlak, P., Jiang, J., Sun, L., Ortolani, D., Londo, J., Gutierrez, B., Prins, B., Reynders, M., Van Caekenberghe, F., Maghradze, D., Marchal, C., Sultan, A., Thomas, J., Scherberich, D., Fulcrand, H., Roumeas, L., Billerach, G., Salimov, V., Musayev, M., Dar, M., Peltier, J., Grisoni, M., 2022. Tannin phenotyping of the Vitaceae reveals a phylogenetic linkage of epigallocatechin in berries and leaves. ANNALS OF BOTANY 130, 159–171. https://doi.org/10.1093/aob/mcac077

Campayo A., Savoi S., Romieu C., López-Jiménez A.J., Serrano de la Hoz K., Salinas M.R., Torregrosa L., Alonso GL. (2021) The application of ozonated water rearranges the Vitis vinifera L. leaf and berry transcriptomes eliciting defence and antioxidant responses. Scientific Reports, 11(1):8114. DOI : 10.1038/s41598-021-87542-y, https://www.nature.com/articles/s41598-021-87542-y

Carrasco D, Bellido A, Vargas AM, Picq S, Bacilieri R, This P, Arroyo-Garcia R. 2020. Comparative analysis of the expression of sex candidate genes in flower of dioecious and hermaphrodite grapevine (Vitis vinifera L. ssp.). Scientia Horticulturae 274 (2020) 109639.

Chomicki G., Staedler Y.M., Bidel L.P.R., Jay Allemand C., Schoenenberger J., Renner S.S. 2018. Deciphering the complex architecture of an herb using micro-computed X-ray tomography, with an illustrated discussion on architectural diversity of herbs . Botanical Journal of the Linnean Society 186(2) 145-157 http://prodinra.inra.fr/record/433111

Cohen P, Bacilieri R, Ramos-Madrigal J, Privman E, Boaretto E, Fuks D, Weiss E, Erickson-Gini T, Tepper Y, Cvikel D, Schmidt J, Gilbert MTP, Wales N, Bar-Oz, Meiri M. 2022. Ancient DNA from a lost Negev Highlands desert grape reveals a late antiquity wine lineage. Accepted in PNAS.

Dong, Y., Duan, S., Xia, Q., Liang, Z., Dong, X., Margaryan, K., Musayev, M., Goryslavets, S., Zdunić, G., Bert, P.-F., Lacombe, T., Maul, E., Nick, P., Bitskinashvili, K., Bisztray, G.D., Drori, E., De Lorenzis, G., Cunha, J., Popescu, C.F., Arroyo-Garcia, R., Arnold, C., Ergül, A., Zhu, Yifan, Ma, C., Wang, Shufen, Liu, S., Tang, L., Wang, C., Li, D., Pan, Y., Li, J., Yang, L., Li, X., Xiang, G., Yang, Z., Chen, B., Dai, Z., Wang, Yi, Arakelyan, A., Kuliyev, V., Spotar, G., Girollet, N., Delrot, S., Ollat, N., This, P., Marchal, C., Sarah, G., Laucou, V., Bacilieri, R., Röckel, F., Guan, P., Jung, A., Riemann, M., Ujmajuridze, L., Zakalashvili, T., Maghradze, D., Höhn, M., Jahnke, G., Kiss, E., Deák, T., Rahimi, O., Hübner, S., Grassi, F., Mercati, F., Sunseri, F., Eiras-Dias, J., Dumitru, A.M., Carrasco, D., Rodriguez-Izquierdo, A., Muñoz, G., Uysal, T., Özer, C., Kazan, K., Xu, M., Wang, Yunyue, Zhu, S., Lu, J., Zhao, M., Wang, L., Jiu, S., Zhang, Y., Sun, L., Yang, H., Weiss, E., Wang, Shiping, Zhu, Youyong, Li, S., Sheng, J., Chen, W., 2023. Dual domestications and origin of traits in grapevine evolution. Science 379, 892–901. https://doi.org/10.1126/science.add8655

Fernandez, R. Le Cunff, Mérigeaud, Verdeil, Perry, Larignon, Spilmont, Chatelet, Cardoso, Goze-Bac, MoisyC, (2022) End-to-end multimodal 3D imaging and machine learning workflow for non-destructive phenotyping and diagnosis of trunk diseases." bioRxiv: doi 2022.2006.2009.495457.

Fernandez, R. and C. Moisy (2021). Fijiyama: a registration tool for 3D multimodal time-lapse imaging. Bioinformatics 37(10): 1482-1484.

Fernandez, R. and C. Moisy (2023). FijiRelax: Fast and noise-corrected estimation of MRI relaxation maps in 3D + t. Journal of Open Source Software, 8(81), 4981. https://doi.org/10.21105/joss.04981.

Flutre T, Le Cunff L, Fodor A, Launay A, Romieu C, Berger G, Bertrand Y, Terrier N, Beccavin I, Bouckenooghe V, Roques M, Pinasseau L, Verbaere A, Sommerer N, Cheynier V, Bacilieri R, Boursiquot JM, Lacombe T, Laucou V, This P, Péros JP, Doligez A. (2022)  Genome-wide association and prediction study using a grapevine diversity panel uncovers the genetic architecture of several traits of interest G3, jkac103, https://doi.org/10.1093/g3journal/jkac103

Flutre T., Diot J., David J. 2019. PlantBreedGame: A Serious Game that Puts Students in the Breeder's Seat. Crop Science 59(4) 1374-1375 https://doi.org/10.2135/cropsci2019.03.0183le

Fournier, P., Pellan, L., Barroso-Bergadà, D., Bohan, D.A., Candresse, T., Delmotte, F., Dufour, M.-C., Lauvergeat, V., Le Marrec, C., Marais, A., Martins, G., Masneuf-Pomarède, I., Rey, P., Sherman, D., This, P., Frioux, C., Labarthe, S., Vacher, C., 2022. Chapter Two - The functional microbiome of grapevine throughout plant evolutionary history and lifetime, in: Bohan, D.A., Dumbrell, A. (Eds.), Advances in Ecological Research. Academic Press, pp. 27–99. https://doi.org/10.1016/bs.aecr.2022.09.001

Gago P., Laucou V., Luis Santiago J., Boso S., Lacombe T., Velayos M., Legrand D., Boursiquot J.M., Martinez M.C. 2019. Preliminary Study of Ancient DNA from a 215-year-old Grapevine Herbarium. American Journal of Enology and Viticulture 70(4) 420-426 https://doi.org/10.5344/ajev.2019.19005

Gould K.S., Jay Allemand C., Logan B.A., Baissac Y., Bidel L. 2018. When are foliar anthocyanins useful to plants? Re-evaluation of the photoprotection hypothesis using Arabidopsis thaliana mutants that differ in anthocyanin accumulation. Environmental and Experimental Botany   https://doi.org/10.1016/j.envexpbot.2018.02.006

Khefifi H, Bancel D, Costantino G, Doligez A, Anna Carla B, Bérard A, Morillon R, Ollitrault P, Luro F. 2022. Mapping of QTLs for citrus quality traits throughout the fruit maturation process on clementine (Citrus reticulata x C. sinensis) and mandarin (C. reticulata Blanco) genetic maps. Tree Genetics & Genomes 18:40. DOI:10.1007/s11295-022-01571-w 

Kunej U., Dervishi A., Laucou V., Jakše J., Štajner N. 2020. The Potential of HTS Approaches for Accurate Genotyping in Grapevine (Vitis vinifera L.). Genes 11 (8), 917.  https://doi.org/10.3390/genes11080917

Lacombe T, Marchal C, Yobrégat O, Sereno C, Wiedemann-Merdinoglu S, Carcenac D, Garcin L, Rodriguez-Cano V, Rossard de Mianville C, Malestroit M, Planchat A, Leclere L, Doligez A, Segura V, Peros JP. 2022. "VITIRAMA : Disease susceptibility data on grapevine" data paper  https://doi.org/10.57745/DAQQVD

Laucou V., Launay A., Bacilieri R., Lacombe T., Adam Blondon A.F., Berard A., Chauveau A., Teresa de Andres M., Hausmann L., Ibanez J., Le Paslier M.C., Maghradze D., Miguel Martinez Zapater J., Maul E., Ponnaiah M., Topfer R., Peros J.P., Boursiquot J.M. 2018. Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs .Plos One 13(2) e0192540 (27 p.) https://doi.org/10.1371/journal.pone.0192540

Le Paslier MC, Choisne N, Bacilieri R, Boursiquot JM, Bras M, Brunel D, Chauveau A, Hausmann L, Lacombe T, Laucou V, Launay A, Marchal C, Martinez-Zapater JM, Berard A, Quesneville H, Tépfer R, Torres-Perez R, Adam-Blondon AF. 2019. A dataset of 9.896 single nuclear polymorphisms for 112 wild grapes, obtained with the GrapeReSeq 18K Vitis chip. https://doi.org/10.15454/9RUCEP.

Miljanić V., Rusjan D, Škvarč A., Chatelet Ph., Štajner N. 2022 Elimination of Eight Viruses and Two Viroids from Preclonal Candidates of Six Grapevine Varieties (Vitis vinifera L.) through In Vivo Thermotherapy and In Vitro Meristem Tip Micrografting. Plants, 2022, 11, 1064. https://doi.org/10.3390/plants11081064

Peros JP, Launay A, Peyrières A, Berger G, Roux C, Lacombe T, Boursiquot J-M (sous presse) Species relationships within genus Vitis based on molecular and morphological data. Plos One

Peros J-P., Cousins P., Launay A., Cubry P., Walker A., Prado E., Peressotti E., Wiedemann-Merdinoglu S., Laucou V., Merdinoglu D., This P., Boursiquot J-M., Doligez A. 2021. Genetic diversity and population structure in Vitis species illustrate phylogeographic patterns in eastern North America. Molecular Ecology. https://doi.org/10.1111/mec.15881. 30 : 2333-2348.

Pipia I, Lacombe T, Kotaria N, Kotorashvili A, Tabidze V (soumis 2022) Complete chloroplast genome sequening of Vitis vinifera ssp. sylvestris, wild ancestors of cultivated grapevines. Vitis

Ramos-Madrigal Jasmin, Anne Kathrine Wiborg Runge, Laurent Bouby, Thierry Lacombe, José Alfredo Samaniego Castruita, Anne-Françoise Adam-Blondon, Isabel Figueiral, Charlotte Hallavant, José Miguel Martinez-Zapater, Caroline Schaal, Reinhard Topfer, Bent Petersen, Thomas Sicheritz-Ponten, Patrice This, Roberto Bacilieri, Thomas P. Gilbert, Nathan Wales (2019). Paleogenomic insights into the origins of French grapevine diversity. Nature Plants, 5 595-603, https://dx.doi.org/10.1038%2Fs41477-019-0437-5, https://hal.inrae.fr/hal-02187462

Reynard JS, Brodard J, Dubuis N, Kellenberger I, Spilmont AS, Roquis D, Maliogka V, Marchal C, Dedet S, Gning O, Croll D, Gindro K, Schumpp O, Spring JL, Lacombe T (2021) Screening of grapevine red blotch virus in two European ampelographic collections. Journal of Plant Pathology. doi:10.1007/s42161-021-00952

Riaz S., Pap D., Uretsky J., Laucou V., Boursiquot J.M., Kocsis L., Walker M.A. 2019.  (2019/03/08). Genetic diversity and parentage analysis of grape rootstocks . Theoretical and Applied Genetics 132(6) 1847-1860 https://doi.org/10.1007/s00122-019-03320-5

RiazS., De Lorenzis G., Velasco D., Koehmstedt A., Magharadze D., Bobokashvili M., Musayev M., Zdunic G., Laucou V., Walker A., Failla O., Preece J. E., Aradhya M., Arroyo-Garcia R. 2018. Genetic diversity analysis of cultivated and wild grapevine (Vitis vinifera L.) accessions around the Mediterranean basin and Central Asia. BMC Plant Biology. 18 (1):137. doi:10.1186/s12870-018-1351-0

Robert P, Brault C, Rincent R, Segura V. (2022) Phenomic Selection: A New and Efficient Alternative to Genomic Selection.  Methods Mol Biol.2467:397-420. https://doi.org/10.1007/978-1-0716-2205-6_14

Royo C., Torres Pérez R., Mauri N., Diestro N., Cabezas J.A., Marchal C., Lacombe T., Ibáñez J., Tornel M., Carreño J., Martínez Zapater J.M., Carbonell Bejerano P. 2018. The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box GeneVviAGL11 .Plant Physiology 177(3) 1234-1253 https://doi.org/10.1104/pp.18.00259

Rustioni, L., Cola, Maghradze, D., Abashidze, E., Argiriou, A., Aroutiounian, R., Brazão, J., Chipashvili, Cocco, M., Cornea, V., Dejeu, L., Eiras-Dias, J. E., Goryslavets, S., Ibáñez, J., Kocsis, L., Lorenzini, F., Maletic, E., Mamasakhlisashvili, L., Margaryan, Maul, E., Mdinaradze, Melyan, Michailidou, Molitor, D., Montemayor, M. I., Muñoz Organero, G., Nebish, Németh, Nikolaou, N., Popescu, C. F., Preiner, Raimondi, S., Risovannaya, Savin, Savvides, S., Schneider, Schwander, Spring, Ujmajuridze, Zioziou, Failla, Bacilieri, R. (2019). Description of the Vitis vinifera L. phenotypic variability in eno-carpological traits by a Euro-Asiatic collaborative network among ampelographic collections. Vitis 58, 37–46 (2019). DOI:10.5073/VITIS.2019.58.37-46.

Savoi, S., Torregrosa, L., Romieu, C., 2021. Transcripts switched off at the stop of phloem unloading highlight the energy efficiency of sugar import in the ripening V. vinifera fruit. HORTICULTURE RESEARCH 8. https://doi.org/10.1038/s41438-021-00628-6

Shahood, R., Torregrosa, L., Savoi, S., Romieu, C., 2020. First quantitative assessment of growth, sugar accumulation and malate breakdown in a single ripening berry. OENO ONE 54, 1077–1092. https://doi.org/10.20870/oeno-one.2020.54.4.3787

Sichel V, Sarah G, Girollet N, Laucou V, Roux C, Le Cunff L, Bert PF, This P, Lacombe T Chimeras in Merlot grapevine revealed by phased assembly, Research Square https://doi.org/10.21203/rs.3.rs-2026816/v1

Sikuten I, Stambuk P, Tomaz I, Marchal C, Kontic JK, Lacombe T, Maletic E, Preiner D (2021) Discrimination of genetic and geographical groups of grape varieties (Vitis vinifera L.) based on their polyphenolic profiles. Journal of Food Composition and Analysis 102. doi:10.1016/j.jfca.2021.104062

Sikuten I, Stambuk P, Tomaz I, Marchal C, Kontic JK, Lacombe T, Maletic E, Preiner D (2022) Discrimination of genetic and geographical groups of grape varieties (Vitis vinifera L.) based on their volatile organic compounds. Frontiers in Plant Science 13. doi:10.3389/fpls.2022.942148

Singh P, S Santoni, A Weber, P This, JP Peros (2019). Understanding the phyllosphere microbiome assemblage in grape species (Vitaceae) with amplicon sequence data structures. Scientific Reports, 9 (1), 11 p., https://dx.doi.org/10.1038%2Fs41598-019-50839-0, https://hal.inrae.fr/hal-02617774

Singh P., Gobbi A., Santoni S., Hansen L. H., This P., Peros J.-P. (2018). Assessing the impact of plant genetic diversity in shaping the microbial community structure of <em>Vitis vinifera</em> phyllosphere in the Mediterranean. Frontiers in Life Science, 11 (1), 35-46, https://dx.doi.org/10.1080/21553769.2018.1552628, https://hal.inrae.fr/hal-02621628,

Singh P., Santoni S., This P., Peros J.-P. (2018). Genotype-environment interaction shapes the microbial assemblage in grapevine’s phyllosphere and carposphere: an NGS approach. Microorganisms, 6 (4), 1-11, https://dx.doi.org/10.3390/microorganisms6040096, https://hal.inrae.fr/hal-02623382, OA

Singh P., Santoni S., Weber A., This P., Peros J.P. 2019. Understanding the phyllosphere microbiome assemblage in grape species (Vitaceae) with amplicon sequence data structures . Scientific Reports 9 14294 https://doi.org/10.1038/s41598-019-50839-0

Tello J., Herzog K., Rist F., This P., Doligez A. 2019. Automatic Flower Number Evaluation in Grapevine Inflorescences Using RGB Images . American Journal of Enology and Viticulture  ajev.2019.19036 https://doi.org/10.5344/ajev.2019.19036

Tello J., Roux C., Chouiki H., Laucou V., Sarah G., Weber A., Santoni S., Flutre T., Pons T., This P., Peros J.P., Doligez A. 2019. A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel population .Theoretical and Applied Genetics 132(8) 2237-2252 https://doi.org/10.1007/s00122-019-03351-y

Torres R, Aliquó G, Toro A, Fernández F, Tornello S, Palazzo E, Sari S, Fanzone M, De Biazi F, Oviedo HJ, Segura R, Laucou V, Lacombe T, Prieto JA (2022) Identification and recovery of local Vitis vinifera L. cultivars collected in ancient vineyards in different locations of Argentina. Australian Journal of Grape and Wine Research 28 (4):581-589. doi:https://doi.org/10.1111/ajgw.12561

Torres R., Aliquo G., Toro A., Fernandez F., Tornello S., Palazzo E., Sari S., Fanzonee M., De Biazi F., Oviedo H. J., Segura R., Laucou V., Lacombe T., Prieto J.A. 2022 Identification and recovery of local Vitis vinifera L. cultivars collected in ancient vineyards in different locations of Argentina. Australian Journal of Grape and Wine Research. doi.org/10.1111/ajgw.12561. 28,4 : 581-589

Wolkovich E.M., Garcia De Cortazar Atauri I., Morales Castilla I., Nicholas K.A., Lacombe T. 2018. From Pinot to Xinomavro in the world's future wine-growing regions. Nature Climate Change 8(1) 29-37 https://doi.org/10.1038/s41558-017-0016-6

Zarghani S.N., Hill J.M., Glasa M., Marais A., Wetzel T., Faure C., Vigne E., Velt A., Lemaire O., Boursiquot J.M., Okic A., Belen Ruiz Garcia A., Olmos A., Lacombe T., Candresse T. 2018. Grapevine virus T diversity as revealed by full-length genome sequences assembled from high-throughput sequence data .Plos One 13(10) e0206010 (17 p.) https://doi.org/10.1371/journal.pone.0206010

Date de mise à jour : 30 avril 2023