Software and analysis platforms

South Green

Platform for the integration of genomic data and bioinformatics analysis

Open Alea

Software platform for the representation, analysis and modelling of the functioning and growth of plant architecture

DarWin

Dissimilarity Analysis and Representation for Windows

Database and information systems

Genome hub

Web portal integrating different types of data around the genomic annotation of reference genomes of different plants, such as banana, rice or cocoa (as part of the South Green platform)

TropGene DB

Genomic, genetic and phenotypic database of tropical plants (as part of the South Green platform)

Models

Ecomeristem

Ecophysiological model applied to cereals (rice, sorghum) simulating the growth and production of the plant in stand, described at the organ level, and its phenotypic plasticity in response to its water and carbon status resulting from genotype X environmental interactions.

Samara

Agronomic model applied to cereals (rice, sorghum), inspired by the Ecomeristem model, offering a less detailed description of the plant's topology but with a more precise consideration of farming practices, particularly in terms of water management and water balance in the context of irrigated rice growing.

X-Palm

Ecophysiological model simulating the growth and production of oil palm described at the organ scale within the plantation and its phenotypic plasticity in response to the carbon and water status of the plant resulting from genotype X environment interactions.

RIDEV

Model of cereal yield phenology (rice, sorghum) and its plasticity in response to photoperiod and potentially extreme thermal conditions.

MappleT

Model for simulating apple tree architecture from planting to adulthood, combining Markovian process modeling and a biomechanical branch bending model.

vMango

Structure-function model of mango trees taking into account architectural and environmental factors (temperature, light, rainfall) for the study of the development of mango yield and quality.