Publications 2020

Badouin H, Velt A, Gindraud F, Flutre T, Dumas V, Vautrin S, Marande W, Corbi J, Sallet E, Ganofsky J, Santoni S, Guyot D, Ricciardelli E, Jepsen K, Käfer J, Berges H, Duchêne E, Picard F, Hugueney P, Tavares R, Bacilieri R, Rustenholz C, Marais GAB (2020) The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication. Genome Biology 21 (1):223. doi:10.1186/s13059-020-02131-y

Ballini E, Tavaud M, Ducasse A, Sanchez D, Paux E, Kitt J, Charmet G, Audigeos D, Roumet P, David J, Morel JB (2020) Genome wide association mapping for resistance to multiple fungal pathogens in a panel issued from a broad composite cross-population of tetraploid wheat Triticum turgidum. Euphytica 216 (6). doi:10.1007/s10681-020-02631-9

Ben Hdech D, Aubry C, Alibert B, Beucher D, Prosperi JM, Limami AM, Teulat B (2020) Exploring natural diversity of Medicago truncatulareveals physiotypes and loci associated with the response of seedling performance to nitrate supply. Physiologia Plantarum. doi:10.1111/ppl.13144

Clo J, Ronfort J, Abu Awad D (2020) Hidden genetic variance contributes to increase the short-term adaptive potential of selfing populations. Journal of Evolutionary Biology. doi:10.1111/jeb.13660

Dievart A, Gottin C, Périn C, Ranwez V, Chantret N (2020) Origin and Diversity of Plant Receptor-Like Kinases. Annual Review of Plant Biology 71 (1):131-156. doi:10.1146/annurev-arplant-073019-025927

Kpatenon MJ, Salako KV, Santoni S, Zekraoui L, Latreille M, Tollon-Cordet C, Mariac C, Jaligot E, Beule T, Adeoti K (2020) Transferability, development of simple sequence repeat (SSR) markers and application to the analysis of genetic diversity and population structure of the African fan palm (Borassus aethiopum Mart.) in Benin. Bmc Genetics 21 (1). doi:10.1186/s12863-020-00955-y

Lacube S, Manceau L, Welcker C, Millet EJ, Gouesnard B, Palaffre C, Ribaut JM, Hammer G, Parent B, Tardieu F (2020) Simulating the effect of flowering time on maize individual leaf area in contrasting environmental scenarios. Journal of experimental botany. doi:10.1093/jxb/eraa278

Montazeaud G, Rousset F, Fort F, Violle C, Freville H, Gandon S (2020a) Farming plant cooperation in crops. Proceedings Biological sciences 287 (1919):20191290. doi:10.1098/rspb.2019.1290

Montazeaud G, Violle C, Roumet P, Rocher A, Ecarnot M, Compan F, Maillet G, Fort F, Fréville H (2020b) Multifaceted functional diversity for multifaceted crop yield: Towards ecological assembly rules for varietal mixtures. Journal of Applied Ecology n/a (n/a). doi:10.1111/1365-2664.13735

Oumata S, David J, Mekliche-Hanifi L, Kharsi M, Zaharieva M, Monneveux P (2020) Oasis wheats of the South of Algeria: landraces, cultural practices and utilization. Genetic Resources and Crop Evolution 67 (2):325-337. doi:10.1007/s10722-019-00874-7

Spor A, Roucou A, Mounier A, Bru D, Breuil M-C, Fort F, Vile D, Roumet P, Philippot L, Violle C (2020) Domestication-driven changes in plant traits associated with changes in the assembly of the rhizosphere microbiota in tetraploid wheat. Scientific Reports 10 (1):12234. doi:10.1038/s41598-020-69175-9

Tamisier L, Szadkowski M, Nemouchi G, Lefebvre V, Szadkowski E, Duboscq R, Santoni S, Sarah G, Sauvage C, Palloix A, Moury B (2020) Genome-wide association mapping of QTLs implied in potato virus Y population sizes in pepper: evidence for widespread resistance QTL pyramiding. Mol Plant Pathol 21 (1):3-16. doi:10.1111/mpp.12874

von Gastrow L, Madec M-N, Chuat V, Lubac S, Morinière C, Lé S, Santoni S, Sicard D, Valence F (2020) Microbial Diversity Associated with Gwell, a Traditional French Mesophilic Fermented Milk Inoculated with a Natural Starter. Microorganisms 8 (7):982

Publications 2021

Arca M, Mary-Huard T, Gouesnard B, Bérard A, Bauland C, Combes V, Madur D, Charcosset A, Nicolas SD (2021) Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array. Frontiers in Plant Science 11 (1926). doi:10.3389/fpls.2020.568699

Bouby L, Chauvet M, Roumet P, Ruas MP (2021) Une histoire des blés durs en France : des origines néolithiques à nos jours In: Allaoua A, Massé J, Abecassis J (eds) Blé dur : synthèse des connaissances pour une production durable. Edition Quae, p 320p.

Burgarella C, Berger A, Glémin S, David J, Terrier N, Deu M, Pot D (2021) The Road to Sorghum Domestication: Evidence From Nucleotide Diversity and Gene Expression Patterns. Front Plant Sci 12:666075. doi:10.3389/fpls.2021.666075

Cartelier K, Aimé D, Ly Vu J, Combes-Soia L, Labas V, Prosperi J-M, Buitink J, Gallardo K, Le Signor C (2021) Genetic determinants of seed protein plasticity in response to the environment in Medicago truncatula. The Plant Journal. doi:https://doi.org/10.1111/tpj.15236

Clo J, Opedal Ø H (2021) Genetics of quantitative traits with dominance under stabilizing and directional selection in partially selfing species. Evolution 75 (8):1920-1935. doi:10.1111/evo.14304

Clo J, Ronfort J, Gay L (2021) Fitness consequences of hybridization in a predominantly selfing species: insights into the role of dominance and epistatic incompatibilities. Heredity. doi:10.1038/s41437-021-00465-2

Diaw Y, Tollon-Cordet C, Charcosset A, Nicolas SD, Madur D, Ronfort J, David J, Gouesnard B (2021) Genetic diversity of maize landraces from the South-West of France. PLoS One 16 (2):e0238334. doi:10.1371/journal.pone.0238334

Du Y, Ranwez S, Sutton-Charani N, Ranwez V (2021a) Is diversity optimization always suitable? Toward a better understanding of diversity within recommendation approaches. Information Processing & Management 58 (6). doi:10.1016/j.ipm.2021.102721

Du Y, Sutton-Charani N, Ranwez S, Ranwez V (2021b) EBCR: Empirical Bayes concordance ratio method to improve similarity measurement in memory-based collaborative filtering. PLoS One 16 (8):e0255929. doi:10.1371/journal.pone.0255929

Gay L, Dhinaut J, Jullien M, Vitalis R, Navascués M, Ranwez V, Ronfort J (2021) Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift. bioRxiv, 20200821261230, Peer Community in Evolutionary Biology. doi:https://doi.org/10.24072/pci.evolbiol.100128

Gottin C, Dievart A, Summo M, Droc G, Périn C, Ranwez V, Chantret N (2021) A new comprehensive annotation of leucine-rich repeat-containing receptors in rice. The Plant journal : for cell and molecular biology. doi:10.1111/tpj.15456

Jullien M, Ronfort J, Gay L (2021) How and when does outcrossing occur in the predominantly selfing species Medicago truncatula? Frontiers in Plant Science 12 (127). doi:10.3389/fpls.2021.619154

Montazeaud G, Langrume C, Moinard S, Goby C, Ducanchez A, Tisseyre B, Brunel G (2021) Development of a low cost open-source ultrasonic device for plant height measurements. Smart Agricultural Technology 1:100022. doi:10.1016/j.atech.2021.100022

Ranwez V, Chantret N, Delsuc F (2021b) Aligning Protein-Coding Nucleotide Sequences with MACSE. In: Katoh K (ed) Multiple Sequence Alignment: Methods and Protocols. Springer US, New York, NY, pp 51-70. doi:10.1007/978-1-0716-1036-7_4

Publications 2022 (January to May)

Colombo M, Montazeaud G, Viader V, Ecarnot M, Prospéri J-M, David J, Fort F, Violle C, Fréville H (2022) A genome-wide analysis suggests pleiotropic effects of Green Revolution genes on shade avoidance in wheat. Evolutionary Applications. doi: 10.1111/eva.13349

Colombo M, Roumet P, Salon C, Jeudy C, Lamboeuf M, Lafarge S, Dumas AV, Dubreuil P, Ngo W, Derepas B, Beauchêne K, Allard V, Le Gouis J, Rincent R (2022) Genetic Analysis of Platform-Phenotyped Root System Architecture of Bread and Durum Wheat in Relation to Agronomic Traits. Frontiers in Plant Science 13:853601. doi:10.3389/fpls.2022.853601

Du Y, Ranwez S, Sutton-Charani N, Ranwez V (2022) Post-hoc recommendation explanations through an efficient exploitation of the DBpedia category hierarchy. Knowledge-Based Systems 245:108560. doi:https://doi.org/10.1016/j.knosys.2022.108560

Fréville H, Montazeaud G, Forst E, David J, Papa R, Tenaillon M (2022) Shift in beneficial interactions during crop evolution. Evolutionary Applications 15, 905–918. doi:10.1111/eva.13390

Montazeaud G, Flutre T, Ballini E, Morel J-B, David J, Girodolle J, Rocher A, Ducasse A, Violle C, Fort F, Fréville H (2022) From cultivar mixtures to allelic mixtures: opposite effects of allelic richness between genotypes and genotype richness in wheat. New Phytologist 233: 2573-2584. doi: 10.1111/nph.17915

Vialatte A, Tibi A, Alignier A, Angeon V, Bedoussac L,  Bohan D, Bougherara D, Carpentier A, Castagneyrol B, Cordeau S, Courtois P, Deguine J-P, Enjalbert J, Fabre F, Féménia F, Fréville H et al (2022) Promoting crop pest control by plant diversification in agricultural landscapes : a conceptual framework for analysing feedback loops between agro-ecological and socio-economic effects. Advances in Ecological Research, 65: 133-165. doi:10.1016/bs.aecr.2021.10.004

Welcker C, Spencer NA, Turc O, Granato I, Chapuis R, Madur D, Beauchene K, Gouesnard B, Draye X, Palaffre C, Lorgeou J, Melkior S, Guillaume C, Presterl T, Murigneux A, Wisser RJ, Millet EJ, van Eeuwijk F, Charcosset A, Tardieu F (2022) Physiological adaptive traits are a potential allele reservoir for maize genetic progress under challenging conditions. Nature Communications 13 (1):3225. doi:10.1038/s41467-022-30872-w