Da Silveira  V.Falavigna, Severing E., Lai X., Estevan J., Farrera I., Hugouvieux V., Zubieta C., Coupland G., Costes E., Andrés F. 2020. Unraveling the role of MADS transcription factor complexes in apple tree dormancy New Phytologist (2021) 232: 2071–2088. https//doi: 10.1111/nph.17710

Ngao J., Martinez S., Marquier A., Bluy S., Saint Joanis B., Costes E., Pallas, B. (2020). Spatial variability in carbon- and nitrogen-related traits in apple trees: the effects of the light environment and crop load. Journal of Experimental Botany, 72 (5): 1933–1945, https://doi.org/10.1093/jxb/eraa559

Estevan, J., Gómez‐Jiménez, S., Falavigna, V. D. S., Camuel, A., Planel, L., Costes, E., Andrés, F. 2020. An efficient protocol for functional studies of apple transcription factors using a glucocorticoid receptor fusion system. Applications in plant sciences, 8(10), e11396.

Belhassine F, Fumey D, Chopard J, Pradal C, Martinez S, Costes E, Pallas B. (2020). Modelling transport of inhibiting and activating signals and their combined effects on floral induction: application to apple tree. Scientific Report, 10:13085. https://doi.org/10.1038/s41598-020-69861-8

Belhassine F., Martinez S., Bluy S., Fumey D., Kelner J. J., Costes E., Pallas B. 2019. Impact of within-tree organ distances on floral induction and fruit growth in apple tree: implication of carbohydrate and gibberellin organ contents. Frontiers in Plant Science, 10, 1233.

Coupel-Ledru A. †, Pallas B. †, Delalande M., Boudon F., Carrié E., Martinez S., Regnard J-L., Costes E. 2019. Multi-scale high-throughput phenotyping of apple architectural and functional traits in orchard reveals genotypic variability under contrasted watering regimes. †co-first author. Horticultural Research 6(1): 52. https://doi.org/10.1038/s41438-019-0137-3

Falavigna VS, Guitton B, Costes E, Andrès F. 2019. I Want to (Bud) Break Free: The Potential Role of DAM and SVP-Like Genes in Regulating Dormancy Cycle in Temperate Fruit Trees. Front. Plant Sci., 10 January 2019 | https://doi.org/10.3389/fpls.2018.01990

Gros‐Balthazard, M ,  Besnard, G,  Sarah, G ,  Holtz, Y ,  Leclercq, J ,  Santoni, S ,  Wegmann, D ,  Glémin, S ,  Khadari, B. 2019. Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication. The Plant Journal 100, 143–157.

Pallas B, Bluy S, Ngao J, Martinez S, Clément-Vidal A, Kelner J-J and Costes E. 2018. Carbon source-sink relationships at organ, shoot and tree scales among apple tree genotypes with contrasted bearing patterns. Tree Physiology. Jan-09 (Epub 2018 Jan 09)

Picheny V., Casadebaig P., Trepos R., Faivre R., Da Silva D., Vincourt P., Costes E. 2017. Using numerical plant models and phenotypic correlation space to design achievable ideotypes Plant Cell and Environment 40, 1926–1939. https://doi.org/10.1111/pce.13001

Migault, V., Pallas, B., Costes, E. 2017. Combining genome-wide information with a functional structural plant model to simulate 1-year-old apple tree architecture. Frontiers in Plant Science, 7, 2065. Special Issue Research Topic “Genotype-Phenotype Models of Plant Growth: From Single Genes to Ideotype Prediction”. Frontiers in Plant Science 2016,  7: 2065. doi:10.3389/fpls.2016.02065.

Durand J.B.†, Allard A.†, Guitton B., van de Weg E., Bink M.C.A.M., Costes E. 2017. Predicting flowering behavior and exploring its genetic determinism in an apple multi-family population based on statistical indices and simplified phenotyping. †co-first author. Frontiers in Plant Science, 8, 858. https://doi.org/10.3389/fpls.2017.00858

Guitton B., Kelner J.J., J.M. Celton, X. Sabau, J.P. Renou, Chagné D., Costes E. 2016. Analysis of transcripts differentially expressed between fruited and deflowered ‘Gala’ adult trees: a contribution to biennial bearing understanding in apple. BMC Plant Biology. 16:55,  http://www.biomedcentral.com/1471-2229/16/55

Allard, A., Bink, M.C.A.M., Martinez, S., Kelner, J.J., Legave, J.M., di Guardo, M., Di Pierro, E.A., Laurens, F., van de Weg, E.W.,  Costes, E. 2016. Detecting QTLs and putative candidate genes involved in budbreak and flowering time in an apple multiparental population. In: Journal of Experimental Botany, vol. 67, n. 9, 2875-2888. DOI:  10.1093/jxb/erw130

Pallas B., Da Silva D., Valsesia P., Yang W., Guillaume O., Lauri P.E., Vercambre G., Génard M., Costes E. 2016. Simulation of carbon allocation and organ growth variability in apple tree by connecting architectural and source–sink models. In: Annals of Botany, vol. 118, n. 2, 317-330. DOI:  10.1093/aob/mcw085

Costes E., Khadari B., Zaher H., Moukhli A., Morillon R., Legave J.M., Regnard J.L. 2016. Adaptation of Mediterranean fruit tree cultivation to climate change. In The Mediterranean region under climate change: a scientific update. Marseille, France: IRD, 503-510)

Virlet N., Costes E., Martinez S., Kelner J.J. and Regnard J.J. 2015 Multi-spectral airborne imagery at field opens the way to genetic determinisms of morphological and transpiration traits of an apple tree hybrid population in response to water deficit. Special issue "Phenotyping in Plants" J. Exp. Bot. 66: 5453–5465.

Gómez Candón, D., Virlet, N., Labbé, S., Jolivot, A., Regnard, J.L. 2016. Field phenotyping of water stress at tree scale by UAV-sensed imagery: New insights for thermal acquisition and calibration. In: Precision Agriculture, vol. 17, n. 6, 786–800. DOI:  10.1007/s11119-016-9449-6