Structure and evolution of genomes (SEG)

Key publications

Last update: 13 March 2023

Luther Fort Mbo Nkoulou, Lauriane Archange Tchinda Ninla, David Cros, Guillaume Martin, Zenabou Ndiang, Jordan Houegban, Hermine Bille Ngalle, Joseph Martin Bell, Enoch G. Achigan-Dako. Analysis of genetic diversity and agronomic variation in banana sub-populations for genomic selection under drought stress in southern Benin. 2023 Gene https://doi.org/10.1016/j.gene.2023.147210

  Peylhard Moana; Berthier David; Dayo Guiguigbaza-Kossigan; Chantal Isabelle; Sylla Souleymane; Nidelet Sabine; Dubois Emeric; Martin Guillaume; Sempéré Guilhem; Flori Laurence; Thévenon Sophie. Whole blood transcriptome profiles of trypanotolerant and trypanosusceptible cattle highlight a differential modulation of metabolism and immune response during infection by Trypanosoma congolense. 2023 Peer Community Journal.https://doi.org/10.24072/pcjournal.239

Guillaume Martin, Aurélien Cottin, Franc-Christophe Baurens, Karine Labadie, Catherine Hervouet, Frédéric Salmon, Nilda Paulo-de-la-Reberdiere, Ines Van den Houwe, Julie Sardos, Jean-Marc Aury, Angélique D'Hont, Nabila Yahiaoui. Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea. 2022 The Plant Journal. https://doi.org/10.1111/tpj.16086

Hoarau, J. Y., Dumont, T., Wei, X., Jackson, P., & D’hont, A. (2022). Applications of quantitative genetics and statistical analyses in sugarcane breeding. Sugar Tech, 24(1), 320-340. https://doi.org/10.1007/s12355-021-01012-3

Dumont, T., Barau, L., Thong-Chane, A., Dijoux, J., Mellin, M., Daugrois, J., & Hoarau, J. Y. (2022). Sugarcane breeding in Reunion: challenges, achievements and future prospects. Sugar Tech, 24(1), 181-192. https://doi.org/10.1007/s12355-021-00998-0

Pompidor N., Charron C., Hervouet C., Bocs S., Droc G., Rivallan R., Manez A., Mitros T., Swaminathan K., Glaszmann J.C., Garsmeur O., D'Hont A.. 2021. Three founding ancestral genomes involved in the origin of sugarcane. Annals of Botany : 14 p..https://doi.org/10.1093/aob/mcab008 

Martin G., Cardi C., Sarah G., Ricci S., Jenny C., Fondi E., Perrier X., Glaszmann J.C., D'Hont A., Yahiaoui N.. 2020. Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. Plant Journal, 102 (5) : p. 1008-1025.https://doi.org/10.1111/tpj.14683 

Martin G., Baurens F.C., Hervouet C., Salmon F., Delos J.M.E., Labadie K., Perdereau A., Mournet P., Blois L., Dupouy M., Carreel F., Ricci S., Lemainque A., Yahiaoui N., D'Hont A.. 2020. Chromosome reciprocal translocations have accompanied subspecies evolution in bananas. Plant Journal, 104 : p. 1698-1711.https://doi.org/10.1111/tpj.15031 

Piperidis N., D'Hont A.. 2020. Sugarcane genome architecture decrypted with chromosome-specific oligo probes. Plant Journal, 103 (6) : p. 2039-2051.https://doi.org/10.1111/tpj.14881

Wang Zhuo, Hongxia Miao, Juhua Liu, Biyu Xu, Xiaoming Yao, Chunyan Xu, Shancen Zhao, Xiaodong Fang, Caihong Jia, Jingyi Wang, Jianbin Zhang, Jingyang Li, Yi Xu, Jiashui Wang, Weihong Ma, Zhangyan Wu, Lili Yu, Yulan Yang, Chun Liu, Yu Guo, Silong Sun, Franc-Christophe Baurens, Guillaume Martin, Frederic Salmon, Olivier Garsmeur, Nabila Yahiaoui, Catherine Hervouet, Mathieu Rouard, Nathalie Laboureau, Remy Habas, Sebastien Ricci, Ming Peng, Anping Guo, Jianghui Xie, Yin Li, Zehong Ding, Yan Yan, Weiwei Tie, Angélique D’Hont, Wei Hu & Zhiqiang Jin. 2019. Musa balbisiana genome reveals subgenome evolution and functional divergenceNature Plants https://doi.org/10.1038/s41477-019-0452-6

Marion Dupouy, Franc-Christophe Baurens, Paco Derouault, Catherine Hervouet, Céline Cardi, Corinne Cruaud, Benjamin Istace, Karine Labadie, Chantal Guiougou, Lyonel Toubi, Frederic Salmon, Pierre Mournet, Mathieu Rouard, Nabila Yahiaoui, Arnaud Lemainque, Guillaume Martin, Angélique D’Hont. 2019. Two large reciprocal translocations characterized in the disease resistance-rich burmannica genetic group of Musa acuminata. Annals of Botany https://doi.org/10.1093/aob/mcz078

Baurens F.C., Martin G., Hervouet C., Salmon F., Yohomé D., Ricci S., Rouard M., Habas R., Lemainque A., Yahiaoui N., D'Hont A. 2019. Recombination and large structural variations shape interspecific edible bananas genomes. Molecular Biology and Evolution, 36(1) : 97-111 https://doi.org/10.1093/molbev/msy199 

Belser C., Istace B., Denis E., Dubarry M., Baurens F.C., Falentin C., Genete M., Berrabah W., Chèvre A.M., Delourme R., Deniot G., Denoeud F., Duffé P., Engelen S., Lemainque A., Manzanares Dauleux M.J., Martin G., Morice J., Noël B., Vekemans X., D'Hont A., Rousseau Gueutin M., Barbe V., Cruaud C., Wincker P., Aury J.M. 2018. Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps. Nature Plants, 4(11) : 879-887 https://doi.org/10.1038/s41477-018-0289-4

Garsmeur O., Droc G., Antonise R., Grimwood J., Potier B., Aitken K.S., Jenkins J., Martin G., Charron C., Hervouet C., Costet L., Yahiaoui N., Healey A., Sims D., Cherukuri Y., Sreedasyam A., Kilian A., Chan A.P., Van Sluys M.A., Swaminathan K., Town C., Berges H., Simmons B., Glaszmann J.C., Van der Vossen E., Henry R., Schmutz J., D'Hont A. 2018. A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nature Communications, 9 : 2638 (10 p.) https://doi.org/10.1038/s41467-018-05051-5.

Martin G., Carreel F., Coriton O., Hervouet C., Cardi C., Derouault P., Roques D., Salmon F., Rouard M., Sardos J., Labadie K., Baurens F.C., D'Hont A. 2017. Evolution of the banana genome (Musa acuminata) is impacted by large chromosomal translocations. Molecular Biology and Evolution, 34(9) : 2140-2152 https://doi.org/10.1093/molbev/msx164

Guilly S., Dumont T., Thong Chane A., Barau L., Hoarau J.Y. 2017. Analysis of multienvironment trials (MET) in the sugarcane breeding program of Réunion Island. Euphytica, 213 : 213 (20 p.) https://doi.org/10.1007/s10681-017-1994-1

Last update: 13 March 2023